bigdatagenomics / adam / 2792
79%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 4
Files 142
Run time 23s
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
2792

Pull #2019

jenkins

GitHub 
Merge a0cb07e45 into 8e8007eb9
Pull Request #2019: Don't discard unmapped reads in indel realignment

109 of 109 new or added lines in 7 files covered. (100.0%)

6592 of 8351 relevant lines covered (78.94%)

3.16 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
86.79
 -2.83% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
89
0.0
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
93.02
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
51.87
 -0.15% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
96.88
 -3.13% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.scala
1
92.59
 -0.93% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
1
82.76
 -3.45% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
1
94.38
 1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
72.73
 -9.09% adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
1
93.15
 -1.37% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
1
94.74
 -0.26% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
93.33
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
96.92
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
84.78
 -2.17% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
1
85.32
 0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
92.86
 -3.57% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2
79.22
 -0.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
83.8
 -0.51% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
3
70.37
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
64.94
 2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
4
89.77
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
6
60.81
 -0.9% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
9
86.79
 -2.83% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
18
92.86
 0.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
38
0.0
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala
Jobs
ID Job ID Ran Files Coverage
1 2792.1 142
78.94
2 2792.2 142
78.94
3 2792.3 142
78.94
4 2792.4 142
78.94
Source Files on build 2792