Ran
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Jobs
1
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Files
41
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Run time
4s
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README BADGES
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travis-ci
42 of 42 new or added lines in 1 file covered. (100.0%)
2049 of 6343 relevant lines covered (32.3%)
0.32 hits per line
Lines | Coverage | ∆ | File |
---|---|---|---|
42 |
33.05 |
-37.82% | util/file.py |
Lines | Coverage | ∆ | File |
---|---|---|---|
1 |
0.0 |
-100.0% | util/feature_table_types.py |
1 |
93.75 |
-2.08% | tools/krona.py |
2 |
77.55 |
-1.36% | util/cmd.py |
14 |
0.0 |
-31.82% | tools/megan.py |
14 |
51.43 |
-40.0% | tools/cdhit.py |
17 |
68.0 |
-11.33% | tools/kraken.py |
20 |
0.0 |
-64.52% | tools/fastqc.py |
21 |
34.15 |
-51.22% | tools/mvicuna.py |
24 |
0.0 |
-27.27% | util/illumina_indices.py |
25 |
0.0 |
-25.25% | util/genbank.py |
28 |
37.29 |
-47.46% | tools/gatk.py |
30 |
0.0 |
-81.08% | tools/muscle.py |
30 |
0.0 |
-42.25% | tools/tbl2asn.py |
30 |
0.0 |
-100.0% | tools/trimmomatic.py |
36 |
23.64 |
-65.45% | tools/prinseq.py |
39 |
42.48 |
-9.47% | tools/__init__.py |
40 |
0.0 |
-27.78% | tools/snpeff.py |
43 |
0.0 |
-91.49% | tools/trinity.py |
52 |
0.0 |
-86.67% | tools/vphaser2.py |
52 |
0.0 |
-89.66% | tools/spades.py |
52 |
0.0 |
-94.55% | tools/gap2seq.py |
57 |
0.0 |
-89.06% | tools/blast.py |
59 |
0.0 |
-83.1% | tools/bmtagger.py |
59 |
33.93 |
-35.12% | tools/bwa.py |
60 |
0.0 |
-85.71% | tools/last.py |
69 |
0.0 |
-60.53% | util/stats.py |
77 |
0.0 |
-87.5% | tools/mafft.py |
79 |
42.11 |
-46.2% | tools/samtools.py |
83 |
18.18 |
-62.88% | tools/novoalign.py |
87 |
41.51 |
-27.36% | tools/picard.py |
97 |
35.92 |
-31.39% | util/misc.py |
98 |
63.68 |
-11.71% | metagenomics.py |
102 |
0.0 |
-43.78% | util/vcf.py |
143 |
0.0 |
-87.73% | util/feature_table.py |
194 |
33.05 |
-37.82% | util/file.py |
241 |
48.09 |
-35.34% | read_utils.py |
290 |
0.0 |
-76.12% | tools/mummer.py |
Coverage | ∆ | File | Lines | Relevant | Covered | Missed | Hits/Line |
---|