broadinstitute / hellbender / 235
62%
master: 81%

LAST BUILD BRANCH: dr_disentangle_spark_and_dataflow
DEFAULT BRANCH: master
Ran
Jobs 1
Files 174
Run time 1min
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travis-pro

mattsooknah 
Porting the rest of picard.sam

1966 of 1966 new or added lines in 33 files covered. (100.0%)

8556 of 13740 relevant lines covered (62.27%)

0.62 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/markduplicates/PhysicalLocationForMateCigar.java
2
100.0
 src/main/java/org/broadinstitute/hellbender/metrics/DuplicationMetrics.java
2
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/markduplicates/PhysicalLocationForMateCigarSet.java
2
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/markduplicates/ReadEnds.java
3
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/markduplicates/AbstractMarkDuplicatesCommandLineProgram.java
4
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/markduplicates/MarkDuplicates.java
4
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/markduplicates/MarkDuplicatesWithMateCigar.java
5
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/markduplicates/DiskBasedReadEndsForMarkDuplicatesMap.java
6
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/markduplicates/MarkQueue.java
7
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/BamIndexStats.java
7
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/CheckTerminatorBlock.java
8
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/MergeSamFiles.java
11
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/markduplicates/ReadEndsForMarkDuplicatesCodec.java
12
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/CalculateReadGroupChecksum.java
12
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/GatherBamFiles.java
15
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/markduplicates/MemoryBasedReadEndsForMarkDuplicatesMap.java
17
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/SortSam.java
17
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/markduplicates/OpticalDuplicateFinder.java
17
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/markduplicates/ReadEndsForMateCigar.java
25
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/ReplaceSamHeader.java
32
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/DownsampleSam.java
32
100.0
 src/main/java/org/broadinstitute/hellbender/utils/iterators/MarkDuplicatesWithMateCigarIterator.java
33
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/AddOrReplaceReadGroups.java
33
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/BuildBamIndex.java
70
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/FilterReads.java
82
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/RevertOriginalBaseQualitiesAndAddMateCigar.java
88
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/ReorderSam.java
104
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/FixMateInformation.java
221
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/markduplicates/EstimateLibraryComplexity.java

Uncovered Existing Lines

Lines Coverage ∆ File
2
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/CreateSequenceDictionary.java
Jobs
ID Job ID Ran Files Coverage
1 235.1 (TERM=dumb) 0
62.27
 Travis Job 235.1
Source Files on build 235
Detailed source file information is not available for this build.