bigdatagenomics / adam / 2773
79%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 4
Files 142
Run time 53s
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2773

Pull #2001

jenkins

GitHub 
Merge f544f01a5 into f05aa9823
Pull Request #2001: [ADAM-1996] Load and save VariantContexts as partitioned Parquet.

50 of 50 new or added lines in 9 files covered. (100.0%)

6482 of 8200 relevant lines covered (79.05%)

3.16 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
52.02
 -0.08% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
3
73.08
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
9
90.49
 -1.2% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
88.37
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
62.16
 1.35% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
70.37
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
62.16
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
1
81.82
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
1
93.33
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
98.46
 1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
89.01
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
1
84.78
 -2.17% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
1
89.29
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2
67.31
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
91.67
 -1.85% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
2
79.83
 0.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
95.51
 -2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
83.29
 -0.54% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2
88.35
 0.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
66.23
 1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
4
90.49
 -1.2% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2773.1 142
79.05
2 2773.2 142
79.05
3 2773.3 142
79.05
4 2773.4 142
79.05
Source Files on build 2773