broadinstitute / hellbender / 180
64%
master: 81%

LAST BUILD BRANCH: dr_disentangle_spark_and_dataflow
DEFAULT BRANCH: master
Ran
Jobs 1
Files 138
Run time 1min
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mattsooknah 
 Migrating picard.sam, part 1

1454 of 1454 new or added lines in 20 files covered. (100.0%)

7531 of 11822 relevant lines covered (63.7%)

0.64 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
100.0
 src/main/java/org/broadinstitute/hellbender/cmdline/PicardCommandLineProgram.java
1
100.0
 src/main/java/org/broadinstitute/hellbender/tools/SplitNCigarReads.java
1
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/AddCommentsToBam.java
1
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/CleanSam.java
1
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/SamFormatConverter.java
1
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/mergealignment/BestMapqPrimaryAlignmentSelectionStrategy.java
3
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/CreateSequenceDictionary.java
3
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/mergealignment/BestEndMapqPrimaryAlignmentStrategy.java
4
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/mergealignment/MostDistantPrimaryAlignmentSelectionStrategy.java
6
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/FastqToSam.java
6
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/MergeBamAlignment.java
9
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/ValidateSamFile.java
13
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/mergealignment/SamAlignmentMerger.java
16
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/mergealignment/HitsForInsert.java
18
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/mergealignment/MultiHitAlignedReadIterator.java
20
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/SamToFastq.java
30
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/mergealignment/AbstractAlignmentMerger.java
68
100.0
 src/main/java/org/broadinstitute/hellbender/tools/picard/RevertSam.java

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 src/main/java/org/broadinstitute/hellbender/tools/SplitReads.java
16
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/ArtificialSAMUtils.java
19
100.0
 src/main/java/org/broadinstitute/hellbender/cmdline/CommandLineProgram.java
20
100.0
 src/main/java/org/broadinstitute/hellbender/tools/SplitNCigarReads.java
23
100.0
 src/main/java/org/broadinstitute/hellbender/utils/IntervalUtils.java
26
100.0
 src/main/java/org/broadinstitute/hellbender/tools/CompareSAMs.java
45
100.0
 src/main/java/org/broadinstitute/hellbender/utils/variant/GATKVariantContextUtils.java
49
100.0
 src/main/java/org/broadinstitute/hellbender/exceptions/UserException.java
50
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/AlignmentUtils.java
77
100.0
 src/main/java/org/broadinstitute/hellbender/utils/Utils.java
92
100.0
 src/main/java/org/broadinstitute/hellbender/utils/sam/ReadUtils.java
138
100.0
 src/main/java/org/broadinstitute/hellbender/utils/MathUtils.java
Jobs
ID Job ID Ran Files Coverage
1 180.1 (TERM=dumb) 0
63.7
 Travis Job 180.1
Source Files on build 180
Detailed source file information is not available for this build.