159
65%
master: 81%

Ran 15 Jan 2015 09:38PM UTC

Jobs 1

Files 77

Run time 36s

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Build # 159

Build Type

push

travis-pro

Committed by

droazen

Commit Message

Port most existing hellbender tools to ReadWalker interface

-CompareSAMs not ported because ReadWalker traversal is not suited
 for it

-SplitNCigarReads not ported because of the way it uses the reference
 (could be ported to ReadWalker with some refactoring, however)

There were a few engine changes as well to accomodate the new ReadWalker tools:

-Method to allow walkers to access the SAM header from the reads data source

-No longer require an index for BAM/SAM files when no intervals are
 provided and no queries are performed.

-onTraversalDone() now allows tools to return a value, which is printed
 out by the engine

Run Details

4996 of 7680 relevant lines covered (65.05%)

0.65 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	159.1 (TERM=dumb)	15 Jan 2015 09:38PM UTC	0	65.05	Travis Job 159.1

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