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broadinstitute / hellbender / 152
65%
master: 81%

Build:
Build:
LAST BUILD BRANCH: dr_disentangle_spark_and_dataflow
DEFAULT BRANCH: master
Ran 15 Jan 2015 06:25PM UTC
Jobs 1
Files 77
Run time 35s
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Engine support for read and reference traversals/queries, and initial ReadWalker interface

ReadWalker: initial walker interface with support for iteration over reads with optional reference
            contextual information

            PrintReadsWithReference is provided as an example ReadWalker

ReadsDataSource: full support for iteration and queries over multiple SAM/BAM files, optionally
                 bounded by intervals

ReferenceDataSource: support for targeted queries by interval (full iteration over the reference not
                     yet supported)

Comprehensive unit tests

167 of 167 new or added lines in 8 files covered. (100.0%)

4991 of 7697 relevant lines covered (64.84%)

0.65 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
100.0
src/main/java/org/broadinstitute/hellbender/utils/iterators/ByteArrayIterator.java
3
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src/main/java/org/broadinstitute/hellbender/engine/ReferenceDataSource.java
4
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src/main/java/org/broadinstitute/hellbender/engine/ReadsDataSource.java
7
100.0
src/main/java/org/broadinstitute/hellbender/engine/GATKTool.java
16
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src/main/java/org/broadinstitute/hellbender/tools/examples/PrintReadsWithReference.java
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src/main/java/org/broadinstitute/hellbender/engine/ReadWalker.java
Jobs
ID Job ID Ran Files Coverage
1 152.1 (TERM=dumb) 15 Jan 2015 06:25PM UTC 0
64.84
Travis Job 152.1
Source Files on build 152
Detailed source file information is not available for this build.
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