ICB-DCM / AMICI / 1061
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Feature swig interface  (#279)

Implement basic python support via swig, closes #272, fixes #225, fixes #128, fixes #27, closes #72

Individual changes:

* swig interface for edata

* fix names of things

* fix edata swig interface

* add rdata interface

* all necessary interfaces in a single file

* implement model specific swig interface

* update travis to install swig

* require newer swig version and update travis install

* fix unique ptr for swig

* replace most unique_ptrs by regular ptrs

* add hdf5 interface

* brack to unique_ptr wrapping

* add support for vector & string, simulation now working

* adapt to new header naming scheme and enforce cmake build order

* fix swig warnings and compile static libraries as position independent code

* compile sundials as PIC

* fix realtype vector interpretation

* basic SBML import

* prototype implementation python tests

* add default setting for unscaled parameters and according testcase

* first successfull amici call from python after python build

* extract SBML test settings

* write default model parameter into model constructor

* fix Jy code generation

* add test result check

* fix jacobian code generation

* fix djydy and djydsigma

* fix local parameters and switch to CodePrinter

* apply boundary conditions and constant species

* actually install amici as python module

* fix dwdp + dwdx generation and compartments

* automatically flatten localParameters, function definitions and initial assignments

* fix flattening code and add logfile to python sbml tests

* Add documentation to python/model.py

* better error message for unsupported functions

* fixed assignment rule for initial values

* refactor some function names and add documentation

* fix assignment of initial values with species in formula

* refactor symbols and functions

* implement replacement for reserved symbols

* New setup.py.in... (continued)
Jobs
ID Job ID Ran Files Coverage
1 1061.1 (ENABLE_GCOV_COVERAGE=TRUE) 0
Travis Job 1061.1
Source Files on build 1061
Detailed source file information is not available for this build.