pymc-devs / pymc3 / 7664
87%

DEFAULT BRANCH: master
Ran
Jobs 11
Files 139
Run time 26min
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
7664

push

travis-ci

junpenglao 
Ordered Transform (#2637)

* initial commit of Ordered, courtesy @aseyboldt

* add composed transform (from @aseyboldt)

* add ordered logistic distr

* add test

* change from function to subclass of Categorical

* test passing on OrderedLogistic

* fix docs up

* fix to docstring

* starting transform tests

* ordered transform tests pass locally, need tests for composed transform

* fix OrderedLogistic import

* remove composed

* a little cleanup

* Remove extra the's (#2960)

* fix test, remove Composed Transform)

* Add release note

* Ordered transformed is not elementwise

* Fix Binomial when p=0 and x=0 (#2961)

* Fix Binomial when p=0 and x=0

Should return 0 not -inf

* Fix logpow(x=0,m=0) 

Fix logpow(x=0,m=0) where x and m have different shapes.

* Fix Jacobian det

- add test
- add namespace
- fix docstring example

* Extend to multiple dimension array version

* Add example

* PEP8 minor fix

* initial commit of Ordered, courtesy @aseyboldt

* add composed transform (from @aseyboldt)

* add ordered logistic distr

* add test

* change from function to subclass of Categorical

* test passing on OrderedLogistic

* fix docs up

* fix to docstring

* starting transform tests

* ordered transform tests pass locally, need tests for composed transform

* fix OrderedLogistic import

* remove composed

* a little cleanup

* fix test, remove Composed Transform)

* Add release note

* Ordered transformed is not elementwise

* Fix Jacobian det

- add test
- add namespace
- fix docstring example

* Extend to multiple dimension array version

* Add example

* PEP8 minor fix

* clearn up rebase error

* Bug fix

Also extend SumTo1 so that it works in multi-dimension

* dimension fix

make sure the return jacobian_det has the right dimension: 
- if the transformation is elementwise, return jacob_det should has the same dimension as the input
- ... (continued)

79 of 79 new or added lines in 5 files covered. (100.0%)

16497 of 18622 relevant lines covered (88.59%)

4.78 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
5
100.0
 pymc3/distributions/discrete.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 pymc3/step_methods/hmc/nuts.py
Jobs
ID Job ID Ran Files Coverage
1 7664.1 (PYTHON_VERSION=2.7 FLOATX='float32' TESTCMD="--durations=10 --ignore=pymc3/tests/test_examples.py --cov-append --ignore=pymc3/tests/test_distributions_random.py --ignore=pymc3/tests/test_variational_inference.py --ignore=pymc3/tests/test_shared.py --ignore=pymc3/tests/test_smc.py --ignore=pymc3/tests/test_updates.py --ignore=pymc3/tests/test_posteriors.py --ignore=pymc3/tests/test_sampling.py") 0
72.77
 Travis Job 7664.1
2 7664.2 (PYTHON_VERSION=2.7 FLOATX='float32' RUN_PYLINT="true" TESTCMD="--durations=10 --cov-append pymc3/tests/test_distributions_random.py pymc3/tests/test_shared.py pymc3/tests/test_smc.py pymc3/tests/test_sampling.py") 0
39.67
 Travis Job 7664.2
3 7664.3 (PYTHON_VERSION=2.7 FLOATX='float32' TESTCMD="--durations=10 --cov-append pymc3/tests/test_examples.py pymc3/tests/test_posteriors.py") 0
25.87
 Travis Job 7664.3
4 7664.4 (PYTHON_VERSION=2.7 FLOATX='float32' TESTCMD="--durations=10 --cov-append pymc3/tests/test_variational_inference.py pymc3/tests/test_updates.py") 0
29.23
 Travis Job 7664.4
5 7664.5 (PYTHON_VERSION=2.7 FLOATX='float64' TESTCMD="--durations=10 --ignore=pymc3/tests/test_examples.py --cov-append --ignore=pymc3/tests/test_distributions_random.py --ignore=pymc3/tests/test_variational_inference.py --ignore=pymc3/tests/test_shared.py --ignore=pymc3/tests/test_smc.py --ignore=pymc3/tests/test_updates.py --ignore=pymc3/tests/test_posteriors.py --ignore=pymc3/tests/test_sampling.py") 0
74.01
 Travis Job 7664.5
6 7664.6 (PYTHON_VERSION=2.7 FLOATX='float64' RUN_PYLINT="true" TESTCMD="--durations=10 --cov-append pymc3/tests/test_distributions_random.py pymc3/tests/test_shared.py pymc3/tests/test_smc.py pymc3/tests/test_sampling.py") 0
40.21
 Travis Job 7664.6
7 7664.7 (PYTHON_VERSION=2.7 FLOATX='float64' TESTCMD="--durations=10 --cov-append pymc3/tests/test_examples.py pymc3/tests/test_posteriors.py") 0
26.36
 Travis Job 7664.7
8 7664.8 (PYTHON_VERSION=3.6 FLOATX='float64' TESTCMD="--durations=10 --cov-append --ignore=pymc3/tests/test_examples.py --ignore=pymc3/tests/test_distributions_random.py --ignore=pymc3/tests/test_variational_inference.py --ignore=pymc3/tests/test_shared.py --ignore=pymc3/tests/test_smc.py --ignore=pymc3/tests/test_updates.py --ignore=pymc3/tests/test_posteriors.py --ignore=pymc3/tests/test_sampling.py") 0
74.23
 Travis Job 7664.8
9 7664.9 (PYTHON_VERSION=3.6 FLOATX='float64' TESTCMD="--durations=10 --cov-append pymc3/tests/test_distributions_random.py pymc3/tests/test_shared.py pymc3/tests/test_smc.py pymc3/tests/test_sampling.py") 0
40.2
 Travis Job 7664.9
10 7664.10 (PYTHON_VERSION=3.6 FLOATX='float64' BUILD_DOCS="true" TESTCMD="--durations=10 --cov-append pymc3/tests/test_examples.py pymc3/tests/test_posteriors.py") 0
26.36
 Travis Job 7664.10
11 7664.11 (PYTHON_VERSION=3.6 FLOATX='float64' TESTCMD="--durations=10 --cov-append pymc3/tests/test_variational_inference.py pymc3/tests/test_updates.py") 0
29.24
 Travis Job 7664.11
Source Files on build 7664
Detailed source file information is not available for this build.