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BUG: Fix problem with custom axes (#665)

* BUG: Fix problem with custom axes

Both for procrustes and for jackknifed plots setting a custom axis would
lead to a failure, specifically:

- Procrustes plots would error since the sample identifiers would be
relabeled twice.

- Jackknifed plots would fail (on JavaScript) because the confidence
intervals didn't have the same dimensions as the coordinates themselves.

Fixes #664

* REV: Address @antgonza's comments

* TST: Fix incorrect test, thanks @antgonza

* DOC: Improve the jackknifed notebook

* TST: Add test for sdev

Addresses @antgonza's comment

* TST: Fix broken test

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