bigdatagenomics / adam / 2754
79%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 4
Files 142
Run time 56s
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2754

Pull #1981

jenkins

GitHub 
Merge 2b12eef24 into 75b51e7d2
Pull Request #1981: [ADAM-1954] Complete refactoring GenomicRDD to GenomicDataset.

400 of 400 new or added lines in 19 files covered. (100.0%)

6472 of 8189 relevant lines covered (79.03%)

3.16 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
86.36
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentDataset.scala
2
87.66
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureDataset.scala
13
91.58
 0.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
81
51.95
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
86.96
 -4.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala
1
62.16
 1.35% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
85.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
59.46
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
90.74
 -0.93% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
1
98.46
 -1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
82.76
 -3.45% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
1
90.0
 0.63% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
83.49
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
1
62.96
 1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
67.53
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
79.83
 0.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
86.41
 -0.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
94.38
 -1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
3
83.02
 -0.54% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
3
91.58
 0.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
5
70.37
 -3.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
Jobs
ID Job ID Ran Files Coverage
1 2754.1 142
79.03
2 2754.2 142
79.03
3 2754.3 142
79.03
4 2754.4 142
79.03
Source Files on build 2754
Coverage ∆ File Lines Relevant Covered Missed Hits/Line