768
79%

Ran 09 Apr 2018 07:24PM UTC

Jobs 2

Files 97

Run time 43s

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Build # 768

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

On demand observable trajectory calculation (#337)

* Pattern matcher for PySB components and model test suite

* More documentation on pattern matching functions

* Add some tests for pattern matcher

* Pattern matcher updates from @jmuhlich's feedback

* Pattern matcher functions are now top-level in pysb.pattern
* Add `matches` methods for ComplexPatterns and ReactionPatterns
* `ComplexPattern.is_equivalent_to` now always does exact comparison

* Compartment and ReactionPattern matching tests

* More unit and doctests for pattern matching

* Make Complex._as_graph() private for now

Add underscore prefix to make as_graph() private, as we may change
the internal implementation of pattern graph at a later date.

* Bond wilcard only matches bonds, not Components

* ANY and WILD were switched in _as_graph()

* Dynamic observable calculation

* Update documentation and py3 compatibility

* Remove duplicated function from rebase

* Improve SimulationResult.observable docstring

Coverage Stats

6566 of 8687 relevant lines covered (75.58%)

1.5 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	768.1	09 Apr 2018 07:24PM UTC	0	75.02	Travis Job 768.1
2	768.2	09 Apr 2018 07:25PM UTC	0	74.73	Travis Job 768.2

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