Ran
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Jobs
1
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Files
51
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Run time
3s
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README BADGES
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travis-ci
1 of 1 new or added line in 1 file covered. (100.0%)
2695 of 7145 relevant lines covered (37.72%)
0.38 hits per line
Lines | Coverage | ∆ | File |
---|---|---|---|
1 |
93.75 |
-2.08% | tools/krona.py |
5 |
44.44 |
-55.56% | util/bam_stats_plugin.py |
9 |
89.57 |
-7.8% | util/_metadata/recording.py |
9 |
30.77 |
-69.23% | util/fasta_stats_plugin.py |
11 |
64.71 |
-32.35% | util/argparse_arg_types.py |
13 |
0.0 |
-13.54% | util/genbank.py |
14 |
0.0 |
-31.82% | tools/megan.py |
14 |
51.43 |
-40.0% | tools/cdhit.py |
15 |
40.54 |
-40.54% | tools/muscle.py |
16 |
68.42 |
-21.05% | util/_metadata/hashing.py |
17 |
68.24 |
-11.49% | tools/kraken.py |
18 |
40.0 |
-60.0% | tools/trimmomatic.py |
18 |
45.71 |
-51.43% | util/_metadata/md_utils.py |
20 |
0.0 |
-64.52% | tools/fastqc.py |
21 |
34.15 |
-51.22% | tools/mvicuna.py |
22 |
44.68 |
-46.81% | tools/trinity.py |
24 |
0.0 |
-27.27% | util/illumina_indices.py |
24 |
78.44 |
-14.37% | util/cmd.py |
26 |
45.57 |
-32.91% | util/_metadata/file_arg.py |
27 |
45.45 |
-49.09% | tools/gap2seq.py |
28 |
37.29 |
-47.46% | tools/gatk.py |
29 |
0.0 |
-43.94% | tools/tbl2asn.py |
31 |
36.21 |
-53.45% | tools/spades.py |
36 |
23.64 |
-65.45% | tools/prinseq.py |
40 |
0.0 |
-27.78% | tools/snpeff.py |
51 |
34.64 |
-33.33% | tools/bwa.py |
52 |
0.0 |
-86.67% | tools/vphaser2.py |
57 |
0.0 |
-89.06% | tools/blast.py |
59 |
0.0 |
-83.1% | tools/bmtagger.py |
59 |
0.0 |
-86.76% | tools/last.py |
60 |
19.32 |
-68.18% | tools/mafft.py |
69 |
14.16 |
-29.61% | util/vcf.py |
69 |
0.0 |
-60.53% | util/stats.py |
76 |
43.03 |
-46.06% | tools/samtools.py |
83 |
18.18 |
-62.88% | tools/novoalign.py |
84 |
42.48 |
-20.39% | tools/__init__.py |
85 |
41.77 |
-26.9% | tools/picard.py |
96 |
44.19 |
-24.81% | util/misc.py |
98 |
71.43 |
-13.59% | metagenomics.py |
156 |
53.9 |
-27.66% | read_utils.py |
159 |
41.73 |
-29.89% | util/file.py |
253 |
9.71 |
-66.4% | tools/mummer.py |
572 |
14.29 |
-74.29% | assembly.py |
Coverage | ∆ | File | Lines | Relevant | Covered | Missed | Hits/Line |
---|