broadinstitute / oncotator / 223
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Files 175
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LeeTL1220 
Merge pull request #263 from broadinstitute/lb_257_fix_coveralls

Fixing coveralls

13292 of 18782 relevant lines covered (70.77%)

0.71 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 oncotator/Annotation.py
1
100.0
 oncotator/datasources/TranscriptProvider.py
1
100.0
 oncotator/input/MafliteInputMutationCreator.py
1
100.0
 oncotator/output/TcgaVcfOutputRenderer.py
1
100.0
 test/TranscriptProviderUtilsTest.py
1
100.0
 test/VariantClassifierTest.py
2
100.0
 oncotator/datasources/GenericGeneProteinPositionDatasource.py
2
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 oncotator/Oncotator.py
2
100.0
 oncotator/output/VcfOutputRenderer.py
3
100.0
 oncotator/config_tables/VcfInputConfigTable.py
3
100.0
 oncotator/datasources/GenericGeneDatasource.py
4
100.0
 oncotator/input/VcfInputMutationCreator.py
6
100.0
 oncotator/Transcript.py
6
100.0
 oncotator/utils/RunSpecificationFactory.py
7
100.0
 oncotator/output/RecordBuilder.py
7
100.0
 oncotator/utils/VariantClassification.py
8
100.0
 oncotator/datasources/TranscriptToUniProtProteinPositionTransformingDatasource.py
8
100.0
 oncotator/MutationData.py
8
100.0
 test/MafliteInputMutationCreatorTest.py
12
100.0
 test/TranscriptToUniProtProteinPositionTransformingDatasourceTest.py
13
100.0
 oncotator/config_tables/VcfOutputConfigTable.py
13
100.0
 oncotator/output/TcgaMafOutputRenderer.py
13
100.0
 test/GenericGeneProteinPositionDatasourceTest.py
13
100.0
 test/TestUtils.py
14
100.0
 oncotator/utils/OncotatorCLIUtils.py
15
100.0
 oncotator/utils/VariantClassifier.py
26
100.0
 oncotator/DatasourceFactory.py
27
100.0
 oncotator/initializeDataSource.py
34
100.0
 oncotator/TranscriptProviderUtils.py
35
100.0
 test/VcfInputMutationCreatorTest.py
35
100.0
 test/VcfOutputRendererTest.py
36
100.0
 test/TcgaMafOutputRendererTest.py
39
100.0
 oncotator/utils/MutUtils.py
48
100.0
 oncotator/output/OutputDataManager.py
55
100.0
 test/EnsemblTranscriptDatasourceTest.py
68
100.0
 oncotator/Annotator.py
97
100.0
 oncotator/datasources/EnsemblTranscriptDatasource.py
100
100.0
 test/AnnotatorTest.py
136
100.0
 test/HgvsChangeTransformerTest.py
Jobs
ID Job ID Ran Files Coverage
1 223.1 0
70.77
 Travis Job 223.1
Source Files on build 223
Detailed source file information is not available for this build.