bigdatagenomics / adam / 2710
80%
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LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 4
Files 141
Run time 1min
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2710

Pull #1921

jenkins

web-flow 
Merge 0d23a9d83 into bc8c6f411
Pull Request #1921: Make Spark SQL APIs supported across all types

431 of 431 new or added lines in 12 files covered. (100.0%)

6380 of 8001 relevant lines covered (79.74%)

3.19 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
84.34
 -1.03% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
1
88.24
 -0.51% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
2
76.85
 -1.45% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
2
86.36
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
2
82.75
 -0.22% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2
90.48
 -2.97% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
2
89.8
 -3.82% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
8
0.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/GenomicDatasetConverters.scala
8
0.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/GenomicRDDConverters.scala
16
91.53
 -1.24% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
22
73.08
 -19.23% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
221
50.84
 -17.87% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
96.88
 -3.13% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.scala
1
88.37
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
94.27
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
69.23
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
89.61
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
80.0
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
88.35
 0.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
64.0
 -4.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
90.0
 -1.43% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
73.08
 -19.23% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
2
95.51
 -2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
61.73
 -1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
81.82
 -18.18% adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala
2
64.94
 1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
2
82.75
 -0.22% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
3
79.58
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
5
82.57
 -3.67% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
6
91.53
 -1.24% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
15
11.76
 -88.24% adam-core/target/generated-sources/src/main/scala/org/bdgenomics/adam/projections/Enums.scala
50
50.84
 -17.87% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2710.1 141
79.74
2 2710.2 141
79.74
3 2710.3 141
79.74
4 2710.4 141
79.74
Source Files on build 2710
Coverage ∆ File Lines Relevant Covered Missed Hits/Line