bigdatagenomics / adam / 2694

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 4
Files 145
Run time 1min
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2694

Pull #1895

jenkins

web-flow 
Merge cb0ba2f3f into fbc7218d8
Pull Request #1895: Adding ReadRDD, SequenceRDD, and SliceRDD.

739 of 739 new or added lines in 19 files covered. (100.0%)

6361 of 8069 relevant lines covered (78.83%)

3.15 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
90.91
 adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaSliceConverter.scala
1
90.0
 0.39% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
78.95
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/FlankSlices.scala
2
50.0
 -2.63% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/JavaADAMContext.scala
3
11.76
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountSliceKmers.scala
3
90.91
 adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaSequenceConverter.scala
3
86.92
 -1.43% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
6
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
10
16.67
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformSlices.scala
11
15.38
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformSequences.scala
21
59.62
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReadRDD.scala
22
73.17
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SequenceRDD.scala
50
0.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/GenomicDatasetConverters.scala
54
0.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/GenomicRDDConverters.scala
77
33.62
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SliceRDD.scala
148
75.7
 -17.33% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
59.38
 -3.13% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
1
79.0
 0.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
94.27
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
69.23
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
95.83
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
64.0
 -4.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
59.46
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
89.01
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
2
86.67
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
2
86.92
 -1.43% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
61.79
 -0.47% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
3
68.52
 -1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
59.26
 -3.7% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
3
83.49
 -1.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
62.34
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
4
94.38
 -2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
32
75.7
 -17.33% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2694.1 145
78.83
2 2694.2 145
78.83
3 2694.3 145
78.83
4 2694.4 145
78.83
Source Files on build 2694
Coverage ∆ File Lines Relevant Covered Missed Hits/Line