bigdatagenomics / adam / 2691
83%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 4
Files 142
Run time 29s
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2691

Pull #1936

jenkins

web-flow 
Merge 1adbabd80 into babf839e0
Pull Request #1936: [ADAM-1934] Clip phred values to 3233, instead of Int.MaxValue.

2 of 2 new or added lines in 1 file covered. (100.0%)

6333 of 7666 relevant lines covered (82.61%)

3.3 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
65.63
 3.13% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
85.71
 -2.38% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformGenotypes.scala
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
91.67
 -0.93% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
94.27
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
61.73
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
95.83
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
80.0
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
91.26
 2.91% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
68.83
 3.9% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
64.0
 -4.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
85.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.scala
1
96.23
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
62.16
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
94.62
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
82.76
 -3.45% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
1
90.0
 -1.43% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
2
93.26
 -2.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
79.0
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
82.57
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
61.79
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
3
72.22
 3.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
67.31
 -5.77% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
3
82.7
 -0.54% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
8
92.9
 -0.77% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2691.1 142
82.61
2 2691.2 142
82.61
3 2691.3 142
82.61
4 2691.4 142
82.61
Source Files on build 2691
Coverage ∆ File Lines Relevant Covered Missed Hits/Line