582
83%

Ran 24 Feb 2018 08:02PM UTC

Jobs 2

Files 20

Run time 28s

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Build # 582

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

Restrict which GTF columns are loaded to speed up database construction (#198)

* using new usecols param for gtfparse to only load subset of GTF columns

* caching mini-conda in travis

* pass MD readme through if RST fails

* miniconda test

* small fix to setup.py

* added restrict_gtf_features

* try using new gtfparse

* add more info to biotype test for BRCA1-001

* language: python

* only run travis tests if pyensembl tests complete successfully

* updated travis

Run Details

15 of 15 new or added lines in 2 files covered. (100.0%)

1191 of 1472 relevant lines covered (80.91%)

1.62 hits per line

New Missed Lines in Diff

Lines	Coverage	∆	File
2	84.13	-0.52%	pyensembl/database.py

Uncovered Existing Lines

Lines	Coverage	∆	File
1	87.32	-0.7%	pyensembl/transcript.py
4	84.62	-15.38%	pyensembl/__init__.py
5	79.49	-6.41%	pyensembl/species.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	582.1	24 Feb 2018 08:02PM UTC	20	80.84	Travis Job 582.1
2	582.2	24 Feb 2018 08:02PM UTC	20	80.91	Travis Job 582.2

Source Files on build 582

Coverage	∆	File	Lines	Relevant	Covered	Missed	Hits/Line

openvax / pyensembl / 582
83%

README BADGES
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Markdown

Textile

RDoc

HTML

Rst

New Missed Lines in Diff

Uncovered Existing Lines

Jobs

Source Files on build 582

openvax / pyensembl / 582 83%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

New Missed Lines in Diff

Uncovered Existing Lines

Jobs

Source Files on build 582

openvax / pyensembl / 582
83%

README BADGES
x