bigdatagenomics / adam / 2673
83%
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LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 4
Files 142
Run time 1min
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2673

Pull #1911

jenkins

jpdna 
nit
Pull Request #1911: [ADAM-651] Hive-style partitioning of parquet files by genomic position

59 of 59 new or added lines in 9 files covered. (100.0%)

6372 of 7714 relevant lines covered (82.6%)

3.3 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
62.33
 0.06% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
2
76.15
 -2.16% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
2
87.58
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
2
86.36
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
2
81.99
 -0.71% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2
89.47
 -3.25% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
2
88.24
 -3.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
4
93.16
 -0.13% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
4
74.11
 2.53% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
94.19
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
93.75
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
95.83
 -4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
85.32
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
84.13
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
94.62
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
2
42.11
 -10.53% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/JavaADAMContext.scala
2
62.33
 0.06% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
2
96.92
 -3.08% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
2
95.51
 -1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
78.38
 -0.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
65.38
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
90.29
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
63.64
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
4
77.78
 -5.56% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fasta.scala
4
72.22
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
4
89.47
 -3.25% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
4
88.24
 -3.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
6
93.16
 -0.13% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
7
85.37
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
7
86.36
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
8
6.67
 0.78% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fastq.scala
11
87.58
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
23
76.15
 -2.16% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
53
81.99
 -0.71% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
86
74.11
 2.53% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2673.1 142
82.6
2 2673.2 142
82.6
3 2673.3 142
82.6
4 2673.4 142
82.6
Source Files on build 2673
Coverage ∆ File Lines Relevant Covered Missed Hits/Line