bigdatagenomics / adam / 2671
83%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 4
Files 142
Run time 35s
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
2671

Pull #1911

jenkins

jpdna 
Save partition size to isPartitioned flag file and load as metadata
Pull Request #1911: [ADAM-651] Hive-style partitioning of parquet files by genomic position

56 of 56 new or added lines in 8 files covered. (100.0%)

6365 of 7711 relevant lines covered (82.54%)

3.3 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
87.58
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
2
86.36
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
2
81.99
 -1.25% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2
89.47
 -3.25% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
2
88.24
 -3.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
3
76.15
 -2.16% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
4
93.16
 -0.13% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
4
74.11
 1.31% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
65.63
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
1
88.37
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
95.51
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
93.75
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
65.38
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
90.29
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
74.11
 1.31% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
59.46
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
84.13
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
94.62
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
2
62.26
 0.47% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
2
94.19
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
2
78.38
 -0.25% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
90.0
 -2.86% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
3
68.52
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
60.49
 -2.47% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
3
81.99
 -1.25% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
4
63.64
 -2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
6
93.16
 -0.13% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2671.1 142
82.54
2 2671.2 142
82.54
3 2671.3 142
82.54
4 2671.4 142
82.54
Source Files on build 2671
Coverage ∆ File Lines Relevant Covered Missed Hits/Line