311
89%

Ran 16 Feb 2018 08:53PM UTC

Jobs 1

Files 43

Run time 9s

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Build # 311

Build Type

Pull #114

travis-ci

Committed by

web-flow

Commit Message

Extract header fields from variants.

Add a PTransform to extract header fields (FORMAT, INFO) form variants.
This feature is activated by a flag, and is useful when there are header
fields in variant with no definition in headers. Without this PTransform
we currently fail the pipeline in such cases.

Pull Request Pull Request #114: Extract header fields from variants.

Run Details

132 of 132 new or added lines in 4 files covered. (100.0%)

3039 of 3354 relevant lines covered (90.61%)

0.91 hits per line

New Missed Lines in Diff

Lines	Coverage	∆	File
1	54.24	-0.94%	gcp_variant_transforms/options/variant_transform_options.py
6	53.15	-1.56%	gcp_variant_transforms/vcf_to_bq.py

Uncovered Existing Lines

Lines	Coverage	∆	File
1	53.15	-1.56%	gcp_variant_transforms/vcf_to_bq.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	311.1	16 Feb 2018 08:53PM UTC	43	90.61	Travis Job 311.1

googlegenomics / gcp-variant-transforms / 311
89%

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googlegenomics / gcp-variant-transforms / 311 89%

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Source Files on build 311

googlegenomics / gcp-variant-transforms / 311
89%

README BADGES
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