309
89%

Ran 16 Feb 2018 07:35PM UTC

Jobs 1

Files 41

Run time 2s

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Build # 309

Build Type

Pull #114

travis-ci

Committed by

web-flow

Commit Message

Extract header fields from variants.

Add a PTransform to extract header fields (FORMAT, INFO) form variants.
This feature is activated by a flag, and is useful when there are header
fields in variant with no definition in headers. Without this PTransform
we currently fail the pipeline in such cases.

Pull Request Pull Request #114: Extract header fields from variants.

Run Details

132 of 132 new or added lines in 4 files covered. (100.0%)

2902 of 3193 relevant lines covered (90.89%)

0.91 hits per line

New Missed Lines in Diff

Lines	Coverage	∆	File
1	55.17	-0.97%	gcp_variant_transforms/options/variant_transform_options.py
6	54.29	-1.05%	gcp_variant_transforms/vcf_to_bq.py

Uncovered Existing Lines

Lines	Coverage	∆	File
2	54.29	-1.05%	gcp_variant_transforms/vcf_to_bq.py

Jobs

ID	Job ID	Ran	Files	Coverage
1	309.1	16 Feb 2018 07:35PM UTC	41	90.89	Travis Job 309.1

googlegenomics / gcp-variant-transforms / 309
89%

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googlegenomics / gcp-variant-transforms / 309 89%

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Source Files on build 309

googlegenomics / gcp-variant-transforms / 309
89%

README BADGES
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