bigdatagenomics / adam / 2666

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 4
Files 145
Run time 30s
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2666

Pull #1895

jenkins

web-flow 
Merge 50c34ae92 into eb3528c7a
Pull Request #1895: Adding ReadRDD, SequenceRDD, and SliceRDD.

752 of 752 new or added lines in 19 files covered. (100.0%)

6368 of 8058 relevant lines covered (79.03%)

3.16 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
89.38
 -0.24% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
78.95
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/FlankSlices.scala
2
50.0
 -2.63% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/JavaADAMContext.scala
3
11.76
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountSliceKmers.scala
3
87.85
 -2.44% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
6
87.23
 adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaSequenceConverter.scala
6
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
10
16.67
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformSlices.scala
11
15.38
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformSequences.scala
21
59.62
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReadRDD.scala
22
73.17
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SequenceRDD.scala
50
0.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/GenomicDatasetConverters.scala
54
0.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/GenomicRDDConverters.scala
77
33.62
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SliceRDD.scala
146
75.92
 -17.37% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
59.38
 -3.13% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
1
92.59
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
88.37
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
95.35
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
95.51
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
78.5
 -0.13% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
63.46
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
89.38
 -0.24% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
80.0
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
84.4
 0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
83.24
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
84.13
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
94.62
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
82.76
 -3.45% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
1
88.35
 0.97% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
2
87.85
 -2.44% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
90.0
 -2.86% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
2
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
3
62.26
 -0.94% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
3
68.52
 -1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
64.94
 -1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
4
0.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/GenomicDatasetConverters.scala
4
0.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/GenomicRDDConverters.scala
32
75.92
 -17.37% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2666.1 145
79.03
2 2666.2 145
79.03
3 2666.3 145
79.03
4 2666.4 145
79.03
Source Files on build 2666
Coverage ∆ File Lines Relevant Covered Missed Hits/Line