bigdatagenomics / cannoli / 103
23%
master: 0%

LAST BUILD BRANCH: adam-0.33.0
DEFAULT BRANCH: master
Ran
Jobs 1
Files 14
Run time 1s
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103

Pull #69

jenkins

web-flow 
Merge 0c9c99a25 into 276be85d0
Pull Request #69: [CANNOLI-104] Provide functions for use in cannoli-shell or notebooks.

184 of 184 new or added lines in 10 files covered. (100.0%)

129 of 449 relevant lines covered (28.73%)

0.29 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
11.76
 0.0% cli/src/main/scala/org/bdgenomics/cannoli/cli/SampleReads.scala
14
5.88
 -1.01% cli/src/main/scala/org/bdgenomics/cannoli/cli/Bedtools.scala
17
7.14
 -1.19% cli/src/main/scala/org/bdgenomics/cannoli/cli/Bcftools.scala
17
7.14
 -1.19% cli/src/main/scala/org/bdgenomics/cannoli/cli/SnpEff.scala
17
7.14
 -1.55% cli/src/main/scala/org/bdgenomics/cannoli/cli/Vt.scala
19
7.14
 -1.55% cli/src/main/scala/org/bdgenomics/cannoli/cli/Bowtie.scala
19
7.14
 -1.55% cli/src/main/scala/org/bdgenomics/cannoli/cli/Bowtie2.scala
19
7.14
 -1.19% cli/src/main/scala/org/bdgenomics/cannoli/cli/Samtools.scala
20
6.45
 -0.96% cli/src/main/scala/org/bdgenomics/cannoli/cli/Freebayes.scala
30
3.13
 -0.45% cli/src/main/scala/org/bdgenomics/cannoli/cli/Bwa.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
7.14
 -1.55% cli/src/main/scala/org/bdgenomics/cannoli/cli/Bowtie2.scala
1
7.14
 -1.55% cli/src/main/scala/org/bdgenomics/cannoli/cli/Bowtie.scala
2
5.88
 -1.01% cli/src/main/scala/org/bdgenomics/cannoli/cli/Bedtools.scala
2
7.14
 -1.19% cli/src/main/scala/org/bdgenomics/cannoli/cli/Samtools.scala
9
3.13
 -0.45% cli/src/main/scala/org/bdgenomics/cannoli/cli/Bwa.scala
Jobs
ID Job ID Ran Files Coverage
1 103.1 14
28.73
Source Files on build 103
Coverage ∆ File Lines Relevant Covered Missed Hits/Line