HadoopGenomics / Hadoop-BAM / 361
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Files 77
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361

Pull #182

travis-ci

web-flow 
Change non-public top-level classes to be nested classes.
Pull Request #182: Reformat in line with the Google Java Style Guide

3878 of 3878 new or added lines in 75 files covered. (100.0%)

2682 of 4194 relevant lines covered (63.95%)

0.64 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/CRAMInputFormat.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/FormatConstants.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/VCFOutputFormat.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/BGZFEnhancedGzipCodec.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/ConfHelper.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/IntervalUtil.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/NIOFileUtil.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/SAMHeaderReader.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/WrapSeekable.java
2
100.0
 src/main/java/org/seqdoop/hadoop_bam/KeyIgnoringBAMRecordWriter.java
2
100.0
 src/main/java/org/seqdoop/hadoop_bam/KeyIgnoringCRAMRecordWriter.java
2
100.0
 src/main/java/org/seqdoop/hadoop_bam/KeyIgnoringVCFRecordWriter.java
2
100.0
 src/main/java/org/seqdoop/hadoop_bam/LineReader.java
2
100.0
 src/main/java/org/seqdoop/hadoop_bam/VCFRecordReader.java
2
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/VCFFileMerger.java
3
100.0
 src/main/java/org/seqdoop/hadoop_bam/LazyBAMRecordFactory.java
3
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/SAMOutputPreparer.java
4
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/SAMFileMerger.java
6
100.0
 src/main/java/org/seqdoop/hadoop_bam/BAMRecordReader.java
7
100.0
 src/main/java/org/seqdoop/hadoop_bam/KeyIgnoringBAMOutputFormat.java
7
100.0
 src/main/java/org/seqdoop/hadoop_bam/KeyIgnoringCRAMOutputFormat.java
7
100.0
 src/main/java/org/seqdoop/hadoop_bam/LazyVCFGenotypesContext.java
7
100.0
 src/main/java/org/seqdoop/hadoop_bam/SAMRecordWritable.java
7
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/DataOutputWrapper.java
8
100.0
 src/main/java/org/seqdoop/hadoop_bam/FileVirtualSplit.java
8
100.0
 src/main/java/org/seqdoop/hadoop_bam/KeyIgnoringBCFRecordWriter.java
8
100.0
 src/main/java/org/seqdoop/hadoop_bam/KeyIgnoringSAMRecordWriter.java
8
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/VCFHeaderReader.java
9
100.0
 src/main/java/org/seqdoop/hadoop_bam/AnySAMOutputFormat.java
9
100.0
 src/main/java/org/seqdoop/hadoop_bam/BaseSplitGuesser.java
9
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/BGZFSplitGuesser.java
11
100.0
 src/main/java/org/seqdoop/hadoop_bam/BAMRecordWriter.java
11
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/DataInputWrapper.java
11
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/GetSortedBAMHeader.java
12
100.0
 src/main/java/org/seqdoop/hadoop_bam/CRAMRecordWriter.java
14
100.0
 src/main/java/org/seqdoop/hadoop_bam/VCFRecordWriter.java
16
100.0
 src/main/java/org/seqdoop/hadoop_bam/KeyIgnoringVCFOutputFormat.java
18
100.0
 src/main/java/org/seqdoop/hadoop_bam/FastaInputFormat.java
21
100.0
 src/main/java/org/seqdoop/hadoop_bam/AnySAMInputFormat.java
21
100.0
 src/main/java/org/seqdoop/hadoop_bam/FastqOutputFormat.java
23
100.0
 src/main/java/org/seqdoop/hadoop_bam/SAMRecordWriter.java
25
100.0
 src/main/java/org/seqdoop/hadoop_bam/FastqInputFormat.java
25
100.0
 src/main/java/org/seqdoop/hadoop_bam/QseqInputFormat.java
26
100.0
 src/main/java/org/seqdoop/hadoop_bam/QseqOutputFormat.java
26
100.0
 src/main/java/org/seqdoop/hadoop_bam/SAMRecordReader.java
29
100.0
 src/main/java/org/seqdoop/hadoop_bam/KeyIgnoringAnySAMOutputFormat.java
30
100.0
 src/main/java/org/seqdoop/hadoop_bam/SplittingBAMIndex.java
34
100.0
 src/main/java/org/seqdoop/hadoop_bam/LazyBCFGenotypesContext.java
38
100.0
 src/main/java/org/seqdoop/hadoop_bam/SequencedFragment.java
39
100.0
 src/main/java/org/seqdoop/hadoop_bam/ReferenceFragment.java
41
100.0
 src/main/java/org/seqdoop/hadoop_bam/SplittingBAMIndexer.java
42
100.0
 src/main/java/org/seqdoop/hadoop_bam/BAMInputFormat.java
45
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/BGZFBlockIndex.java
47
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/BGZFSplitFileInputFormat.java
54
100.0
 src/main/java/org/seqdoop/hadoop_bam/BCFRecordWriter.java
60
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/MurmurHash3.java
68
100.0
 src/main/java/org/seqdoop/hadoop_bam/BAMSplitGuesser.java
76
100.0
 src/main/java/org/seqdoop/hadoop_bam/VCFInputFormat.java
82
100.0
 src/main/java/org/seqdoop/hadoop_bam/VariantContextCodec.java
99
100.0
 src/main/java/org/seqdoop/hadoop_bam/BCFRecordReader.java
101
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/BGZFBlockIndexer.java
188
100.0
 src/main/java/org/seqdoop/hadoop_bam/BCFSplitGuesser.java

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/AnySAMInputFormat.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/BaseSplitGuesser.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/BCFSplitGuesser.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/BGZFCodec.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/GetSortedBAMHeader.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/MurmurHash3.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/SAMHeaderReader.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/VCFHeaderReader.java
2
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/VCFFileMerger.java
7
100.0
 src/main/java/org/seqdoop/hadoop_bam/LineReader.java
Jobs
ID Job ID Ran Files Coverage
1 361.1 0
63.95
 Travis Job 361.1
Source Files on build 361
Detailed source file information is not available for this build.