broadinstitute / viral-ngs / 5545
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DEFAULT BRANCH: master
Ran
Jobs 2
Files 45
Run time 56min
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bugfix ncbi annotation (#786)

* bugfix ncbi annotation

path should be parsed from the first element of the expansion

* remove erroneous string concat

* pipe stderr to stdout to check for tbl2asn year-old message

2 of 2 new or added lines in 1 file covered. (100.0%)

6102 of 8631 relevant lines covered (70.7%)

0.93 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
100.0
 tools/tbl2asn.py

Uncovered Existing Lines

Lines Coverage ∆ File
2
100.0
 util/misc.py
Jobs
ID Job ID Ran Files Coverage
5 5545.5 (TRAVIS_JOB=test_py36 PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure]) 0
70.64
 Travis Job 5545.5
6 5545.6 (TRAVIS_JOB=test_snakemake PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure]) 0
33.82
 Travis Job 5545.6
Source Files on build 5545
Detailed source file information is not available for this build.