bigdatagenomics / adam / 2640

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 4
Files 145
Run time 1min
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2640

Pull #1895

jenkins

web-flow 
Merge 1ea398463 into aa43a5686
Pull Request #1895: Adding ReadRDD, SequenceRDD, and SliceRDD.

739 of 739 new or added lines in 19 files covered. (100.0%)

6363 of 8052 relevant lines covered (79.02%)

3.16 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
89.39
 adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaSliceConverter.scala
1
88.75
 0.44% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
78.95
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/FlankSlices.scala
2
40.91
 -1.2% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/JavaADAMContext.scala
2
93.94
 adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaSequenceConverter.scala
3
11.76
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountSliceKmers.scala
3
85.05
 -3.3% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
6
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
10
16.67
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformSlices.scala
11
15.38
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformSequences.scala
21
59.62
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReadRDD.scala
22
73.17
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SequenceRDD.scala
50
0.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/GenomicDatasetConverters.scala
54
0.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/GenomicRDDConverters.scala
77
33.62
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SliceRDD.scala
146
75.92
 -17.37% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
62.5
 -3.13% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
78.88
 0.13% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1
95.83
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
86.67
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
83.24
 0.27% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
94.62
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
91.43
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
2
61.79
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
2
90.74
 -1.85% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
2
94.38
 -1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
93.75
 -1.04% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
2
65.38
 -3.85% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
2
61.73
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
85.05
 -3.3% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
84.4
 -0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
2
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
3
64.94
 3.9% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
4
0.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/GenomicDatasetConverters.scala
4
0.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/GenomicRDDConverters.scala
33
75.92
 -17.37% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2640.1 145
79.02
2 2640.2 145
79.02
3 2640.3 145
79.02
4 2640.4 145
79.02
Source Files on build 2640
Coverage ∆ File Lines Relevant Covered Missed Hits/Line