bigdatagenomics / adam / 2631

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 4
Files 145
Run time 30s
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2631

Pull #1895

jenkins

web-flow 
Merge 12285a11e into cc7e4472a
Pull Request #1895: Adding ReadRDD, SequenceRDD, and SliceRDD.

752 of 752 new or added lines in 19 files covered. (100.0%)

6358 of 8050 relevant lines covered (78.98%)

3.16 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
90.0
 1.04% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
78.95
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/FlankSlices.scala
2
40.91
 -1.2% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/JavaADAMContext.scala
3
11.76
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountSliceKmers.scala
3
85.98
 -2.37% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
6
87.23
 adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaSequenceConverter.scala
6
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
10
16.67
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformSlices.scala
11
15.38
 adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformSequences.scala
21
59.62
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReadRDD.scala
22
73.17
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SequenceRDD.scala
50
0.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/GenomicDatasetConverters.scala
54
0.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/GenomicRDDConverters.scala
77
33.62
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/sequence/SliceRDD.scala
147
75.43
 -17.84% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
65.63
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
92.59
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
88.37
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
95.83
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
85.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.scala
1
62.16
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
2
95.51
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
2
78.75
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
80.0
 -13.33% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
2
85.98
 -2.37% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
82.7
 -0.54% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2
69.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/ReferenceContigMap.scala
3
66.67
 -3.7% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
3
84.4
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
63.64
 1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
4
0.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/GenomicDatasetConverters.scala
4
0.0
 0.0% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/GenomicRDDConverters.scala
4
61.79
 -0.94% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
36
75.43
 -17.84% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2631.1 145
78.98
2 2631.2 145
78.98
3 2631.3 145
78.98
4 2631.4 145
78.98
Source Files on build 2631
Coverage ∆ File Lines Relevant Covered Missed Hits/Line