qiita-spots / qp-deblur / 153

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travis-ci

Comm archive (#37)

* set of pre-computed placements for unit tests

* unit tests for SEPP communication with QIITA archive

* adding parameter for reference phylogeny/alignment for SEPP

* added communication with QIITA archive for SEPP

* additional check for presence of reference parameter, if not than fall back to default Greengenes 13.8

* adding in reference parameters

* had to update templates

* slight update to a test

* adding tree construction

* pre-populate archive to save runtime during testing

* also install files for unit testing

* extended expected output by ref tree

* will that fix unit tests?

* updated conda env for deblur to match latest version

* updated version number to match deblur

* smaller try blocks

* removed unused code

* tests for failing binaries

* split tests to ensure clean database

82 of 87 branches covered (94.25%)

34 of 34 new or added lines in 1 file covered. (100.0%)

180 of 182 relevant lines covered (98.9%)

0.99 hits per line