bigdatagenomics / adam / 2580
83%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 4
Files 142
Run time 20s
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2580

Pull #1878

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/8dba23a8112688edb0e2e0e5114fd8b2d282fb75">8dba23a81<a href="https://github.com/bigdatagenomics/adam/commit/8dba23a8112688edb0e2e0e5114fd8b2d282fb75">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/d522418bae51cc74e16dd98e295362dfd81d6653">d522418ba</a>">d522418ba</a><a href="https://github.com/bigdatagenomics/adam/commit/8dba23a8112688edb0e2e0e5114fd8b2d282fb75"> into 4223f56b3">4223f56b3</a>
Pull Request #1878: hive-style partitioning of parquet files by genomic position

55 of 55 new or added lines in 3 files covered. (100.0%)

6345 of 7674 relevant lines covered (82.68%)

3.31 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
5
74.72
 0.87% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
12
92.06
 -1.34% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
87.38
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
1
62.26
 -0.47% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
63.46
 -1.92% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
82.76
 -3.45% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
1
94.62
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
64.94
 3.9% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1
91.43
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
93.33
 -6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
62.96
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
91.67
 -4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2
96.92
 -3.08% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
2
78.57
 -0.13% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
91.67
 -1.85% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
2
93.75
 -1.04% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
2
87.38
 -0.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
4
66.67
 -5.56% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
15
74.72
 0.87% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
36
92.06
 -1.34% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
58
82.43
 -0.54% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2580.1 142
82.68
2 2580.2 142
82.68
3 2580.3 142
82.68
4 2580.4 142
82.68
Source Files on build 2580
Coverage ∆ File Lines Relevant Covered Missed Hits/Line