bigdatagenomics / adam / 2560
83%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 4
Files 142
Run time 1min
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2560

Pull #1778

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/cb0808dfdf3a3b07a5343ef10dda0118295bec58">cb0808dfd<a href="https://github.com/bigdatagenomics/adam/commit/cb0808dfdf3a3b07a5343ef10dda0118295bec58">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/cd14abf54c2e1c7a4037d51739c7f70e49800be6">cd14abf54</a>">cd14abf54</a><a href="https://github.com/bigdatagenomics/adam/commit/cb0808dfdf3a3b07a5343ef10dda0118295bec58"> into fdefb02a6">fdefb02a6</a>
Pull Request #1778: added adam notebook

6305 of 7605 relevant lines covered (82.91%)

3.32 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
96.88
 -3.13% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.scala
1
62.26
 0.47% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
1
98.46
 -1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
94.19
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
85.32
 1.83% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
59.46
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
82.76
 -3.45% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
1
94.62
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
98.88
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
2
72.22
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
78.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
91.67
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2
61.73
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
82.7
 -0.54% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
3
64.94
 1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
11
38.89
 -3.22% adam-apis/src/main/scala/org/bdgenomics/adam/api/java/JavaADAMContext.scala
31
93.7
 0.19% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2560.1 142
82.91
2 2560.2 142
82.91
3 2560.3 142
82.89
4 2560.4 142
82.89
Source Files on build 2560
Coverage ∆ File Lines Relevant Covered Missed Hits/Line