bigdatagenomics / adam / 2558
80%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 4
Files 142
Run time 45s
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2558

Pull #1866

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/dc5aa9420df956f189d4b93ef045f33d9022612b">dc5aa9420<a href="https://github.com/bigdatagenomics/adam/commit/dc5aa9420df956f189d4b93ef045f33d9022612b">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/a24ea20deabd1c54293d5764808b2a32f46c5660">a24ea20de</a>">a24ea20de</a><a href="https://github.com/bigdatagenomics/adam/commit/dc5aa9420df956f189d4b93ef045f33d9022612b"> into 71f9d131f">71f9d131f</a>
Pull Request #1866: Add loadPairedFastqAsFragments method.

6 of 6 new or added lines in 2 files covered. (100.0%)

6304 of 7617 relevant lines covered (82.76%)

3.31 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
93.79
 0.28% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
88.37
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
93.26
 -1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
87.38
 0.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
1
65.38
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
73.56
 -0.29% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
62.16
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
82.97
 -0.27% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2
61.79
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
2
70.37
 -1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
93.02
 -2.33% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
2
60.49
 -1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
84.4
 0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
2
87.38
 -0.97% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
3
78.7
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
4
61.04
 -2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
8
93.79
 0.28% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2558.1 142
82.76
2 2558.2 142
82.76
3 2558.3 142
82.76
4 2558.4 142
82.76
Source Files on build 2558
Coverage ∆ File Lines Relevant Covered Missed Hits/Line