HadoopGenomics / Hadoop-BAM / 353
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Jobs 1
Files 80
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353

Pull #153

travis-ci

web-flow 
Fixup after rebase, add unit test source.
Pull Request #153: Reformat source code for consistent use of whitespace.

4027 of 4027 new or added lines in 76 files covered. (100.0%)

2616 of 4183 relevant lines covered (62.54%)

0.63 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/CRAMInputFormat.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/CRAMRecordWriter.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/VCFOutputFormat.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/ConfHelper.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/SAMHeaderReader.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/WrapSeekable.java
2
100.0
 src/main/java/org/seqdoop/hadoop_bam/FormatConstants.java
2
100.0
 src/main/java/org/seqdoop/hadoop_bam/KeyIgnoringVCFRecordWriter.java
2
100.0
 src/main/java/org/seqdoop/hadoop_bam/VCFRecordReader.java
2
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/IntervalUtil.java
3
100.0
 src/main/java/org/seqdoop/hadoop_bam/LazyBAMRecordFactory.java
3
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/BGZFCodec.java
4
100.0
 src/main/java/org/seqdoop/hadoop_bam/KeyIgnoringBAMRecordWriter.java
4
100.0
 src/main/java/org/seqdoop/hadoop_bam/KeyIgnoringCRAMOutputFormat.java
4
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/BGZFSplitCompressionInputStream.java
4
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/Pair.java
4
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/Timer.java
4
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/VCFFileMerger.java
5
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/BGZFEnhancedGzipCodec.java
6
100.0
 src/main/java/org/seqdoop/hadoop_bam/BAMRecordReader.java
7
100.0
 src/main/java/org/seqdoop/hadoop_bam/KeyIgnoringBAMOutputFormat.java
7
100.0
 src/main/java/org/seqdoop/hadoop_bam/LazyVCFGenotypesContext.java
7
100.0
 src/main/java/org/seqdoop/hadoop_bam/SAMRecordWritable.java
7
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/BGZFCompressionOutputStream.java
7
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/DataOutputWrapper.java
8
100.0
 src/main/java/org/seqdoop/hadoop_bam/FileVirtualSplit.java
8
100.0
 src/main/java/org/seqdoop/hadoop_bam/KeyIgnoringBCFRecordWriter.java
8
100.0
 src/main/java/org/seqdoop/hadoop_bam/KeyIgnoringSAMRecordWriter.java
8
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/SAMFileMerger.java
9
100.0
 src/main/java/org/seqdoop/hadoop_bam/AnySAMOutputFormat.java
9
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/BGZFSplitGuesser.java
9
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/GetSortedBAMHeader.java
9
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/NIOFileUtil.java
9
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/VCFHeaderReader.java
10
100.0
 src/main/java/org/seqdoop/hadoop_bam/BaseSplitGuesser.java
10
100.0
 src/main/java/org/seqdoop/hadoop_bam/LineReader.java
11
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/DataInputWrapper.java
13
100.0
 src/main/java/org/seqdoop/hadoop_bam/VCFRecordWriter.java
15
100.0
 src/main/java/org/seqdoop/hadoop_bam/BAMRecordWriter.java
16
100.0
 src/main/java/org/seqdoop/hadoop_bam/FastaInputFormat.java
16
100.0
 src/main/java/org/seqdoop/hadoop_bam/KeyIgnoringVCFOutputFormat.java
20
100.0
 src/main/java/org/seqdoop/hadoop_bam/FastqInputFormat.java
20
100.0
 src/main/java/org/seqdoop/hadoop_bam/FastqOutputFormat.java
21
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/SeekableArrayStream.java
22
100.0
 src/main/java/org/seqdoop/hadoop_bam/AnySAMInputFormat.java
23
100.0
 src/main/java/org/seqdoop/hadoop_bam/QseqInputFormat.java
25
100.0
 src/main/java/org/seqdoop/hadoop_bam/QseqOutputFormat.java
25
100.0
 src/main/java/org/seqdoop/hadoop_bam/SAMRecordWriter.java
26
100.0
 src/main/java/org/seqdoop/hadoop_bam/SAMRecordReader.java
33
100.0
 src/main/java/org/seqdoop/hadoop_bam/KeyIgnoringAnySAMOutputFormat.java
34
100.0
 src/main/java/org/seqdoop/hadoop_bam/LazyBCFGenotypesContext.java
34
100.0
 src/main/java/org/seqdoop/hadoop_bam/ReferenceFragment.java
34
100.0
 src/main/java/org/seqdoop/hadoop_bam/SplittingBAMIndex.java
38
100.0
 src/main/java/org/seqdoop/hadoop_bam/SequencedFragment.java
40
100.0
 src/main/java/org/seqdoop/hadoop_bam/BAMInputFormat.java
46
100.0
 src/main/java/org/seqdoop/hadoop_bam/SplittingBAMIndexer.java
47
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/BGZFBlockIndex.java
51
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/BGZFSplitFileInputFormat.java
53
100.0
 src/main/java/org/seqdoop/hadoop_bam/BCFRecordWriter.java
58
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/MurmurHash3.java
69
100.0
 src/main/java/org/seqdoop/hadoop_bam/BAMSplitGuesser.java
77
100.0
 src/main/java/org/seqdoop/hadoop_bam/VCFInputFormat.java
79
100.0
 src/main/java/org/seqdoop/hadoop_bam/VariantContextCodec.java
99
100.0
 src/main/java/org/seqdoop/hadoop_bam/BCFRecordReader.java
103
100.0
 src/main/java/org/seqdoop/hadoop_bam/util/BGZFBlockIndexer.java
191
100.0
 src/main/java/org/seqdoop/hadoop_bam/BCFSplitGuesser.java

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/KeyIgnoringCRAMOutputFormat.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/KeyIgnoringCRAMRecordWriter.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/CRAMRecordWriter.java
1
100.0
 src/main/java/org/seqdoop/hadoop_bam/BCFRecordReader.java
2
100.0
 src/main/java/org/seqdoop/hadoop_bam/ReferenceFragment.java
Jobs
ID Job ID Ran Files Coverage
1 353.1 0
62.54
 Travis Job 353.1
Source Files on build 353
Detailed source file information is not available for this build.