1436

Ran 15 Nov 2014 12:19AM UTC

Jobs 1

Files 192

Run time 1min

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Build # 1436

Build Type

Pull #376

travis-ci

Committed by

kgururaj

Commit Message

1. Moved MergedVCFLUTBase<> inside utils namespace
2. Return "" if bcf_hdr_int2id() returns nullptr in get_field_name(),
get_sample_name() in VariantHeader
3. Better comments for MergedVCFLUTBase and VariantHeaderMerger
4. Removed custom missing() functions - use gamgee::missing() only
5. Merged VCF header resides inside VariantHeaderMerger. It is
constructed using add_header(), add_headers()
functions. A const reference can be obtained by using
get_merged_header().
6. All get_*_lut() functions are now const
7. Use default destructor
8. Check to ensure all test paths for test cases for VariantHeaderMerger
(see variant_header_merger_test_path_counters)

Pull Request Pull Request #376: Added LUT for merged header in MultipleVariantReader

Run Details

214 of 214 new or added lines in 5 files covered. (100.0%)

2853 of 3054 relevant lines covered (93.42%)

1321.18 hits per line

New Missed Lines in Diff

Lines	Coverage	File
2	95.45	gamgee/utils/merged_vcf_lut.cpp
15	76.19	gamgee/variant_header_merger.cpp
32	38.46	gamgee/variant_header_merger.h
40	14.89	gamgee/utils/merged_vcf_lut.h

Uncovered Existing Lines

Lines	Coverage	∆	File
1	40.0	-10.0%	gamgee/cigar.h
1	94.74	0.0%	gamgee/synced_variant_reader.h
1	88.89	55.56%	gamgee/variant.h
3	25.0	25.0%	gamgee/exceptions.h
3	75.0	19.44%	gamgee/fastq.h

Jobs

ID	Job ID	Ran	Files	Coverage
2	1436.2	15 Nov 2014 12:19AM UTC	192	93.42	Travis Job 1436.2

Source Files on build 1436

Coverage	∆	File	Lines	Relevant	Covered	Missed	Hits/Line

broadinstitute / gamgee / 1436

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broadinstitute / gamgee / 1436

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