719
79%

Ran 02 Dec 2017 01:48AM UTC

Jobs 2

Files 97

Run time 22s

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Build # 719

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

Add `|` reversible rule operator (#309)

* Fix Kappa interface error display on Python3

KaSim/KaSa interface errors do not display when running PySB under
Python 3 (e.g. #300) due to a missing bytes-to-string conversion.
This PR resolves this using `.decode('utf8')` and adds a unit test
to check errors are raised properly with KaSim.

* Add `|` reversible rule operator

PySB currently uses `<>` in reversible rules, but this syntax is not
compatible with Python 3, which removed that operator. The current
workaround is to use `!=`, which is suboptimal.

Following discussions with the PySB core team, I have implemented
`|` as a reversible rule operator, and added a
`PendingDeprecationWarning` to `<>`. The `<>` syntax should become
deprecated then removed at a later date.

Old syntax:

    A(b=None) + A(b=None) <> A(b=1) % A(b=1)

New syntax:

    A(b=None) + A(b=None) | A(b=1) % A(b=1)

* Update pattern matcher with | for reversible rules

Run Details

6706 of 8853 relevant lines covered (75.75%)

1.34 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	719.1	02 Dec 2017 01:49AM UTC	97	73.71	Travis Job 719.1
2	719.2	02 Dec 2017 01:48AM UTC	97	72.58	Travis Job 719.2

Source Files on build 719

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LoLab-VU / pysb / 719 79%

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LoLab-VU / pysb / 719
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