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biokit / bioconvert / 168
89%

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DEFAULT BRANCH: master
Ran 20 Nov 2017 03:40PM UTC
Jobs 2
Files 42
Run time 1min
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Blaise Li
Ignore comments in test_fastq2fasta. New method.

The new method is based on mappy:
https://github.com/lh3/minimap2/blob/master/python/README.rst

It doesn't give access to the comment/description in fastx headers. For
that reason, I added a way to generate fasta without comments when
unwrapping and use this for the tests. This choice could be discussed,
and it would be easy to revert by setting `strip_comment=False` in
`Fastq2Fasta.unwrap_fasta`.

11 of 11 new or added lines in 1 file covered. (100.0%)

1154 of 1396 relevant lines covered (82.66%)

1.65 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
100.0
bioconvert/fastq2fasta.py
Jobs
ID Job ID Ran Files Coverage
1 168.1 20 Nov 2017 03:41PM UTC 0
82.66
Travis Job 168.1
2 168.2 20 Nov 2017 03:40PM UTC 0
82.66
Travis Job 168.2
Source Files on build 168
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