3510
91%

Ran 25 Oct 2017 11:57PM UTC

Jobs 3

Files 31

Run time 7min

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Build # 3510

Build Type

push

jenkins

Committed by Frank Austin Nothaft

Commit Message

Add code for squaring off genotypes that include reference models.

Resolves bigdatagenomics/adam#1312. Enables gVCF style data to be used with the
joint variant caller by extracting the sites where a variant was called as a
genotype in one of the gVCFs. These variant sites are then joined back against
the original genotypes. If the genotyped allele was not present and a reference
model block is present, the allele is extracted out from the reference model.

Coverage Stats

1293 of 1591 relevant lines covered (81.27%)

2.44 hits per line

Jobs

ID	Job ID	Ran	Coverage
1	3510.1	25 Oct 2017 11:57PM UTC	81.27
2	3510.2	26 Oct 2017 12:00AM UTC	81.27
3	3510.3	26 Oct 2017 12:05AM UTC	81.27

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