3506
91%

Ran 25 Oct 2017 11:08AM UTC

Jobs 4

Files 31

Run time 1min

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Build # 3506

Build Type

push

jenkins

Committed by Frank Austin Nothaft

Commit Message

Add code for squaring off genotypes that include reference models.

Resolves bigdatagenomics/adam#1312. Enables gVCF style data to be used with the
joint variant caller by extracting the sites where a variant was called as a
genotype in one of the gVCFs. These variant sites are then joined back against
the original genotypes. If the genotyped allele was not present and a reference
model block is present, the allele is extracted out from the reference model.

Coverage Stats

1293 of 1591 relevant lines covered (81.27%)

3.25 hits per line

Jobs

ID	Job ID	Ran	Coverage
1	3506.1	25 Oct 2017 11:08AM UTC	81.27
2	3506.2	25 Oct 2017 11:09AM UTC	81.27
3	3506.3	25 Oct 2017 11:09AM UTC	81.27
4	3506.4	25 Oct 2017 11:10AM UTC	81.27

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