3504
91%

Ran 24 Oct 2017 12:32PM UTC

Jobs 3

Files 31

Run time 4min

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Build # 3504

Build Type

push

jenkins

Committed by Frank Austin Nothaft

Commit Message

Add code for squaring off genotypes that include reference models.

Resolves bigdatagenomics/adam#1312. Enables gVCF style data to be used with the
joint variant caller by extracting the sites where a variant was called as a
genotype in one of the gVCFs. These variant sites are then joined back against
the original genotypes. If the genotyped allele was not present and a reference
model block is present, the allele is extracted out from the reference model.

Coverage Stats

1293 of 1591 relevant lines covered (81.27%)

2.44 hits per line

Jobs

ID	Job ID	Ran	Coverage
1	3504.1	24 Oct 2017 12:32PM UTC	81.27
2	3504.2	24 Oct 2017 12:35PM UTC	81.27
3	3504.3	24 Oct 2017 12:37PM UTC	81.27

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