692
79%

Ran 19 Oct 2017 06:15PM UTC

Jobs 2

Files 94

Run time 1min

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Build # 692

Build Type

push

travis-ci

Committed by Jeremy Muhlich

Commit Message

Save and load SimulationResults to HDF5 files (#292)

HDF5 is a hierarchical, binary storage format well suited to storing
matrix-like data. This implementation uses the h5py package.

The file format stores not only the simulation trajectories,
but also metadata relevant to archiving, such as the model itself,
simulation settings, parameter and initial condition values,
simulation date/time, and PySB version. A new `custom_attrs` dict
of annotations can be added to a SimulationResult object, the
contents of which will be stored in the HDF5 file as group attributes.

The goals of this feature are to aid reproducibility and to facilitate
exchange of simulation data.

Coverage Stats

6217 of 8202 relevant lines covered (75.8%)

1.34 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	692.1	19 Oct 2017 06:15PM UTC	0	73.66	Travis Job 692.1
2	692.2	19 Oct 2017 06:17PM UTC	0	72.44	Travis Job 692.2

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