3478
91%

Ran 16 Oct 2017 03:19PM UTC

Jobs 3

Files 30

Run time 2min

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Build # 3478

Build Type

push

jenkins

Committed by Frank Austin Nothaft

Commit Message

[AVOCADO-253] Add joint variant caller, direct save to VCF.

Resolves #199, #253. Adds back a joint variant caller that computes rolled up
variant level statistics and that saves directly out to VCF. This uses a
binomial prior based on the alternate allele frequency to update the genotypes.
We use the posteriors to generate the variant quality score.

Coverage Stats

1224 of 1490 relevant lines covered (82.15%)

2.46 hits per line

Jobs

ID	Job ID	Ran	Coverage
1	3478.1	16 Oct 2017 03:19PM UTC	82.15
2	3478.2	16 Oct 2017 03:21PM UTC	82.15
3	3478.3	16 Oct 2017 03:22PM UTC	82.15

Source Files on build 3478

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