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hammerlab / spark-bam / 20
72%

Build:
DEFAULT BRANCH: master
Ran 14 Sep 2017 04:36PM UTC
Jobs 1
Files 61
Run time 7s
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20

Pull #5

travis-ci

web-flow
more full.MainTest
Pull Request #5: port to spark split-computation, improve checking/benchmarking

1398 of 1398 new or added lines in 55 files covered. (100.0%)

957 of 1520 relevant lines covered (62.96%)

0.63 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
100.0
bgzf/src/main/scala/org/hammerlab/bgzf/block/FindBlockStart.scala
1
100.0
check/src/main/scala/org/hammerlab/args/SplitSize.scala
1
100.0
check/src/main/scala/org/hammerlab/bam/check/Blocks.scala
1
100.0
check/src/main/scala/org/hammerlab/bam/iterator/RecordIterator.scala
1
100.0
check/src/main/scala/org/hammerlab/bam/iterator/RecordStream.scala
1
100.0
check/src/main/scala/org/hammerlab/bam/kryo/Registrar.scala
1
100.0
check/src/main/scala/org/hammerlab/bam/spark/BAMRecordRDD.scala
1
100.0
cli/src/main/scala/org/hammerlab/bam/check/CheckerMain.scala
1
100.0
load/src/main/scala/org/hammerlab/bam/spark/package.scala
2
100.0
check/src/main/scala/org/hammerlab/args/Range.scala
2
100.0
check/src/main/scala/org/hammerlab/bam/check/NextRecord.scala
2
100.0
check/src/main/scala/org/hammerlab/bam/check/full/error/FlagsSerializer.scala
2
100.0
check/src/main/scala/org/hammerlab/bam/check/full/error/Registrar.scala
2
100.0
check/src/main/scala/org/hammerlab/bam/index/Read.scala
3
100.0
bgzf/src/main/scala/org/hammerlab/bgzf/block/Stream.scala
3
100.0
check/src/main/scala/org/hammerlab/bam/spark/ParallelConfig.scala
4
100.0
bgzf/src/main/scala/org/hammerlab/bgzf/block/package.scala
4
100.0
check/src/main/scala/org/hammerlab/bam/check/Checker.scala
4
100.0
check/src/main/scala/org/hammerlab/bam/spark/FindRecordStart.scala
5
100.0
bgzf/src/main/scala/org/hammerlab/bgzf/block/Header.scala
5
100.0
check/src/main/scala/org/hammerlab/args/ByteRanges.scala
5
100.0
cli/src/main/scala/org/hammerlab/bam/rewrite/Main.scala
6
100.0
bgzf/src/main/scala/org/hammerlab/bgzf/block/UncompressedBytes.scala
6
100.0
check/src/main/scala/org/hammerlab/args/Ranges.scala
6
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check/src/main/scala/org/hammerlab/bam/check/full/error/CigarOpsError.scala
6
100.0
seqdoop/src/main/scala/org/hammerlab/bam/check/seqdoop/Checker.scala
7
100.0
bgzf/src/main/scala/org/hammerlab/bgzf/block/PosIterator.scala
7
100.0
check/src/main/scala/org/hammerlab/bam/spark/Split.scala
7
100.0
cli/src/main/scala/org/hammerlab/bam/Main.scala
7
100.0
cli/src/main/scala/org/hammerlab/bam/spark/compare/Main.scala
7
100.0
seqdoop/src/main/scala/org/hammerlab/bam/check/seqdoop/TruncatableSeekableStream.scala
8
100.0
check/src/main/scala/org/hammerlab/bam/check/full/error/RefPosError.scala
8
100.0
check/src/main/scala/org/hammerlab/bam/check/indexed/Checker.scala
8
100.0
check/src/main/scala/org/hammerlab/bam/index/IndexRecords.scala
10
100.0
check/src/main/scala/org/hammerlab/bam/check/full/error/ReadNameError.scala
11
100.0
check/src/main/scala/org/hammerlab/bam/index/Index.scala
13
100.0
bgzf/src/main/scala/org/hammerlab/bgzf/block/Block.scala
14
100.0
check/src/main/scala/org/hammerlab/bam/check/eager/Checker.scala
15
100.0
bgzf/src/main/scala/org/hammerlab/bgzf/Pos.scala
16
100.0
check/src/main/scala/org/hammerlab/bam/header/ContigLengths.scala
17
100.0
load/src/main/scala/org/hammerlab/bam/spark/load/CanLoadBam.scala
18
100.0
cli/src/main/scala/org/hammerlab/bam/spark/Main.scala
23
100.0
check/src/main/scala/org/hammerlab/bam/check/PosMetadata.scala
27
100.0
test_bams/src/main/scala/org/hammerlab/bam/test/resources/package.scala
30
100.0
cli/src/main/scala/org/hammerlab/bam/check/full/Main.scala
33
100.0
check/src/main/scala/org/hammerlab/bam/check/full/error/Counts.scala
36
100.0
check/src/main/scala/org/hammerlab/bam/check/full/error/Flags.scala
61
100.0
check/src/main/scala/org/hammerlab/bam/check/full/Checker.scala
Jobs
ID Job ID Ran Files Coverage
1 20.1 14 Sep 2017 04:36PM UTC 0
62.96
Travis Job 20.1
Source Files on build 20
Detailed source file information is not available for this build.
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