hammerlab / spark-bam / 20
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Files 61
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20

Pull #5

travis-ci

web-flow 
more full.MainTest
Pull Request #5: port to spark split-computation, improve checking/benchmarking

1398 of 1398 new or added lines in 55 files covered. (100.0%)

957 of 1520 relevant lines covered (62.96%)

0.63 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
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 bgzf/src/main/scala/org/hammerlab/bgzf/block/FindBlockStart.scala
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 check/src/main/scala/org/hammerlab/args/SplitSize.scala
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 check/src/main/scala/org/hammerlab/bam/check/Blocks.scala
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 check/src/main/scala/org/hammerlab/bam/iterator/RecordIterator.scala
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 check/src/main/scala/org/hammerlab/bam/iterator/RecordStream.scala
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 check/src/main/scala/org/hammerlab/bam/kryo/Registrar.scala
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 check/src/main/scala/org/hammerlab/bam/spark/BAMRecordRDD.scala
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 cli/src/main/scala/org/hammerlab/bam/check/CheckerMain.scala
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 load/src/main/scala/org/hammerlab/bam/spark/package.scala
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 check/src/main/scala/org/hammerlab/args/Range.scala
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 check/src/main/scala/org/hammerlab/bam/check/NextRecord.scala
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 check/src/main/scala/org/hammerlab/bam/check/full/error/FlagsSerializer.scala
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 check/src/main/scala/org/hammerlab/bam/check/full/error/Registrar.scala
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 check/src/main/scala/org/hammerlab/bam/index/Read.scala
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 bgzf/src/main/scala/org/hammerlab/bgzf/block/Stream.scala
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 check/src/main/scala/org/hammerlab/bam/spark/ParallelConfig.scala
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 bgzf/src/main/scala/org/hammerlab/bgzf/block/package.scala
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 check/src/main/scala/org/hammerlab/bam/check/Checker.scala
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 check/src/main/scala/org/hammerlab/bam/spark/FindRecordStart.scala
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 bgzf/src/main/scala/org/hammerlab/bgzf/block/Header.scala
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 check/src/main/scala/org/hammerlab/args/ByteRanges.scala
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 cli/src/main/scala/org/hammerlab/bam/rewrite/Main.scala
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 bgzf/src/main/scala/org/hammerlab/bgzf/block/UncompressedBytes.scala
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 check/src/main/scala/org/hammerlab/args/Ranges.scala
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 check/src/main/scala/org/hammerlab/bam/check/full/error/CigarOpsError.scala
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 seqdoop/src/main/scala/org/hammerlab/bam/check/seqdoop/Checker.scala
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 bgzf/src/main/scala/org/hammerlab/bgzf/block/PosIterator.scala
7
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 check/src/main/scala/org/hammerlab/bam/spark/Split.scala
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 cli/src/main/scala/org/hammerlab/bam/Main.scala
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 cli/src/main/scala/org/hammerlab/bam/spark/compare/Main.scala
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 seqdoop/src/main/scala/org/hammerlab/bam/check/seqdoop/TruncatableSeekableStream.scala
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 check/src/main/scala/org/hammerlab/bam/check/full/error/RefPosError.scala
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 check/src/main/scala/org/hammerlab/bam/check/indexed/Checker.scala
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 check/src/main/scala/org/hammerlab/bam/index/IndexRecords.scala
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 check/src/main/scala/org/hammerlab/bam/check/full/error/ReadNameError.scala
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 check/src/main/scala/org/hammerlab/bam/index/Index.scala
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 bgzf/src/main/scala/org/hammerlab/bgzf/block/Block.scala
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 check/src/main/scala/org/hammerlab/bam/check/eager/Checker.scala
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 bgzf/src/main/scala/org/hammerlab/bgzf/Pos.scala
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 check/src/main/scala/org/hammerlab/bam/header/ContigLengths.scala
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 load/src/main/scala/org/hammerlab/bam/spark/load/CanLoadBam.scala
18
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 cli/src/main/scala/org/hammerlab/bam/spark/Main.scala
23
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 check/src/main/scala/org/hammerlab/bam/check/PosMetadata.scala
27
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 test_bams/src/main/scala/org/hammerlab/bam/test/resources/package.scala
30
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 cli/src/main/scala/org/hammerlab/bam/check/full/Main.scala
33
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 check/src/main/scala/org/hammerlab/bam/check/full/error/Counts.scala
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 check/src/main/scala/org/hammerlab/bam/check/full/error/Flags.scala
61
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 check/src/main/scala/org/hammerlab/bam/check/full/Checker.scala
Jobs
ID Job ID Ran Files Coverage
1 20.1 0
62.96
 Travis Job 20.1
Source Files on build 20
Detailed source file information is not available for this build.