bigdatagenomics / adam / 2976

DEFAULT BRANCH: master
Ran
Jobs 8
Files 140
Run time 3min
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2976

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jenkins

Michael L Heuer 
[ADAM-1709] Add ability to left normalize reads containing INDELs.

Resolves #1709. Opens protection on main method in NormalizationUtils to be
package-private to org.bdgenomics.adam. Adds code to AlignmentRecordRDD
exposing INDEL normalization as a transformation.

10 of 10 new or added lines in 1 file covered. (100.0%)

6241 of 7470 relevant lines covered (83.55%)

6.64 hits per line

Coverage Regressions

Lines Coverage ∆ File
42
100.0
 adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2976.1 0
83.04
2 2976.2 0
83.05
3 2976.3 0
83.04
4 2976.4 0
83.05
5 2976.5 0
83.04
6 2976.6 0
83.05
7 2976.7 0
83.05
8 2976.8 0
83.04
Source Files on build 2976
Detailed source file information is not available for this build.