bigdatagenomics / adam / 2965

DEFAULT BRANCH: master
Ran
Jobs 8
Files 140
Run time 3min
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2965

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jenkins

heuermh 
[ADAM-1709] Add ability to left normalize reads containing INDELs.

Resolves #1709. Opens protection on main method in NormalizationUtils to be
package-private to org.bdgenomics.adam. Adds code to AlignmentRecordRDD
exposing INDEL normalization as a transformation.

10 of 10 new or added lines in 1 file covered. (100.0%)

6241 of 7470 relevant lines covered (83.55%)

6.64 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
42
82.88
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2965.1 140
83.05
2 2965.2 140
83.04
3 2965.3 140
83.04
4 2965.4 140
83.05
5 2965.5 140
83.04
6 2965.6 140
83.04
7 2965.7 140
83.05
8 2965.8 140
83.05
Source Files on build 2965
Coverage ∆ File Lines Relevant Covered Missed Hits/Line