bigdatagenomics / adam / 2356
83%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 1
Files 140
Run time 6s
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2356

Pull #1704

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/311615c4341eb3d25d23ae77095be8381a06005a">311615c43<a href="https://github.com/bigdatagenomics/adam/commit/311615c4341eb3d25d23ae77095be8381a06005a">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/c8550bc3334c25ba9f3e268145221434a7b468d9">c8550bc33</a>">c8550bc33</a><a href="https://github.com/bigdatagenomics/adam/commit/311615c4341eb3d25d23ae77095be8381a06005a"> into 51efbafef">51efbafef</a>
Pull Request #1704: Misc cleanup needed for bigdatagenomics/cannoli#65

9 of 9 new or added lines in 1 file covered. (100.0%)

6203 of 7467 relevant lines covered (83.07%)

0.83 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
5
68.0
 -15.33% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
96.92
 -1.54% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
1
92.59
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
1
95.35
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
93.75
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
89.81
 -0.64% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
62.96
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
95.77
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
69.65
 -0.29% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1
62.16
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
82.76
 -3.45% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/ReferencePositionPair.scala
1
84.13
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
92.21
 -1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
1
44.44
 -11.11% adam-core/src/main/scala/org/bdgenomics/adam/rich/RichVariant.scala
1
98.88
 -0.37% adam-core/src/main/scala/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
2
94.38
 -1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
3
62.26
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
3
88.35
 -1.94% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
83.49
 -2.75% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
4
70.37
 -5.56% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
5
63.64
 -3.9% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
13
92.99
 -1.48% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2356.1 140
83.07
Source Files on build 2356
Coverage ∆ File Lines Relevant Covered Missed Hits/Line