bigdatagenomics / adam / 2354
84%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 140
Run time 1min
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
2354

Pull #1711

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/2d23defb86ffa5ed334626f70c63285a22aef1ec">2d23defb8<a href="https://github.com/bigdatagenomics/adam/commit/2d23defb86ffa5ed334626f70c63285a22aef1ec">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/8fcb03f95984406147efe377e4dd57c4bd18eb01">8fcb03f95</a>">8fcb03f95</a><a href="https://github.com/bigdatagenomics/adam/commit/2d23defb86ffa5ed334626f70c63285a22aef1ec"> into 51efbafef">51efbafef</a>
Pull Request #1711: [ADAM-1709] Add ability to left normalize reads containing INDELs.

10 of 10 new or added lines in 1 file covered. (100.0%)

6241 of 7470 relevant lines covered (83.55%)

6.64 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
94.27
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
62.96
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
93.33
 6.67% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
85.32
 -0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
82.88
 0.76% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
84.13
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
2
83.01
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
3
61.79
 -0.47% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
3
74.07
 -1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
5
94.07
 -0.4% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
6
63.64
 -3.9% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
Jobs
ID Job ID Ran Files Coverage
1 2354.1 140
83.05
2 2354.2 140
83.05
3 2354.3 140
83.04
4 2354.4 140
83.04
5 2354.5 140
83.05
6 2354.6 140
83.04
7 2354.7 140
83.05
8 2354.8 140
83.04
Source Files on build 2354
Coverage ∆ File Lines Relevant Covered Missed Hits/Line