bigdatagenomics / adam / 2338
84%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 140
Run time 2min
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Pull #1696

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/9d2dc3ac24ef0ca1b19b94c85bc3608d752447a7">9d2dc3ac2<a href="https://github.com/bigdatagenomics/adam/commit/9d2dc3ac24ef0ca1b19b94c85bc3608d752447a7">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/ca9cbd5fffa2720c273cd6bcef8f3960d52c4d67">ca9cbd5ff</a>">ca9cbd5ff</a><a href="https://github.com/bigdatagenomics/adam/commit/9d2dc3ac24ef0ca1b19b94c85bc3608d752447a7"> into 12c56fded">12c56fded</a>
Pull Request #1696: [ADAM-1693] Add adam-shell friendly VariantContextRDD.saveAsVcf method.

3 of 3 new or added lines in 2 files covered. (100.0%)

6227 of 7444 relevant lines covered (83.65%)

6.65 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
91.11
 -2.22% adam-core/src/main/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtils.scala
1
96.63
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
94.27
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
62.96
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
95.77
 -1.41% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
86.24
 0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
77.78
 -5.56% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
98.11
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
84.13
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
92.21
 -1.13% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
2
91.26
 0.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
68.83
 2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
3
94.61
 -0.13% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2338.1 140
83.0
2 2338.2 140
82.99
3 2338.3 140
83.0
4 2338.4 140
82.99
5 2338.5 140
83.15
6 2338.6 140
83.15
7 2338.7 140
83.17
8 2338.8 140
83.17
Source Files on build 2338
Coverage ∆ File Lines Relevant Covered Missed Hits/Line