bigdatagenomics / adam / 2323
83%
master: %

LAST BUILD BRANCH: cli-partition
DEFAULT BRANCH: master
Ran
Jobs 8
Files 140
Run time 2min
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2323

Pull #1620

jenkins

web-flow 
<a href="https://github.com/bigdatagenomics/adam/commit/<a class=hub.com/bigdatagenomics/adam/commit/e3dbfac9ca6e92addb4c4fcd087326d48d4e7aad">e3dbfac9c<a href="https://github.com/bigdatagenomics/adam/commit/e3dbfac9ca6e92addb4c4fcd087326d48d4e7aad">">Merge </a><a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/<a class="double-link" href="https://github.com/bigdatagenomics/adam/commit/59740ee07c5d3c213c2331dc5b305b617a09ae28">59740ee07</a>">59740ee07</a><a href="https://github.com/bigdatagenomics/adam/commit/e3dbfac9ca6e92addb4c4fcd087326d48d4e7aad"> into b46b58342">b46b58342</a>
Pull Request #1620: add hive style partitioning for contigName

27 of 27 new or added lines in 2 files covered. (100.0%)

6250 of 7482 relevant lines covered (83.53%)

6.64 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
94.47
 -0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
97.75
 1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
94.27
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
95.83
 4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
64.2
 1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
67.31
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1
93.33
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
1
95.77
 -1.41% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
85.32
 -0.92% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
82.68
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
1
62.16
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
84.13
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
92.0
 -1.33% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
2
75.93
 -1.85% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
93.02
 -2.33% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
2
90.29
 0.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
3
62.26
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
4
66.23
 -1.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
11
78.3
 3.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
39
94.47
 -0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
45
82.07
 -0.26% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
65
69.28
 0.45% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2323.1 140
83.09
2 2323.2 140
83.09
3 2323.3 140
83.08
4 2323.4 140
83.08
5 2323.5 140
83.04
6 2323.6 140
83.04
7 2323.7 140
83.05
8 2323.8 140
83.05
Source Files on build 2323
Coverage ∆ File Lines Relevant Covered Missed Hits/Line