bigdatagenomics / adam / 2899

DEFAULT BRANCH: master
Ran
Jobs 8
Files 140
Run time 4min
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2899

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jenkins

fnothaft 
added ExtractRegions function to NucleotideContigFragmentRDD

14 of 14 new or added lines in 1 file covered. (100.0%)

6208 of 7440 relevant lines covered (83.44%)

6.64 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
78.3
 3.3% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
77.78
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
88.37
 -1.16% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastqRecordConverter.scala
1
94.27
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
97.18
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ShuffleRegionJoin.scala
1
86.96
 -4.35% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.scala
1
77.78
 -5.56% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
1
62.16
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
98.11
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
84.13
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
92.0
 -1.33% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantContextRDD.scala
2
62.5
 -3.13% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Reads2Coverage.scala
2
82.05
 -0.28% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
61.73
 -1.23% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
2
94.74
 0.27% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
2
67.53
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
Jobs
ID Job ID Ran Files Coverage
1 2899.1 140
82.87
2 2899.2 140
82.87
3 2899.3 140
82.89
4 2899.4 140
82.89
5 2899.5 140
83.06
6 2899.6 140
83.05
7 2899.7 140
83.06
8 2899.8 140
83.05
Source Files on build 2899
Coverage ∆ File Lines Relevant Covered Missed Hits/Line