bigdatagenomics / adam / 2887

DEFAULT BRANCH: master
Ran
Jobs 7
Files 140
Run time 1min
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2887

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jenkins

heuermh 
R CoverageRDD collapse method was misnamed.

6198 of 7426 relevant lines covered (83.46%)

5.81 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
77.78
 5.56% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
84.21
 -2.63% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformVariants.scala
1
96.63
 1.12% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
1
95.35
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
1
91.67
 -4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
89.81
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
86.24
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
2
67.53
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
3
62.26
 -0.47% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala
4
94.47
 -0.54% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
4
91.84
 0.17% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/VariantRDD.scala
4
92.73
 0.13% adam-core/src/main/scala/org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala
7
89.06
 0.17% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
11
88.74
 0.08% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala
12
85.54
 0.18% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/CoverageRDD.scala
20
75.0
 0.27% adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentRDD.scala
43
82.68
 0.05% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
101
68.82
 -2.52% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
Jobs
ID Job ID Ran Files Coverage
1 2887.1 140
83.03
2 2887.2 140
83.02
3 2887.3 140
83.02
4 2887.4 140
83.02
5 2887.5 140
83.01
6 2887.6 140
83.02
7 2887.7 140
83.01
Source Files on build 2887
Coverage ∆ File Lines Relevant Covered Missed Hits/Line